Bioinformatics Pipeline Optimization
Genomics workloads require careful orchestration across compute resources. This document explores how Xubit agents optimize these workflows.
The Challenge
Agent-Based Optimization
Our Bio Research Agent monitors pipeline execution and dynamically adjusts resource allocation based on:
Case Study: Whole Genome Sequencing
A 30x WGS pipeline optimized from $45 to $28 per sample through intelligent provider selection.
Before Optimization
| Stage | Provider | Cost |
|-------|----------|------|
| Alignment | AWS | $15 |
| Variant Calling | AWS | $20 |
| Annotation | AWS | $10 |
| **Total** | | **$45** |
After Agent Optimization
| Stage | Provider | Cost |
|-------|----------|------|
| Alignment | DNAnexus | $10 |
| Variant Calling | Seven Bridges | $12 |
| Annotation | AWS | $6 |
| **Total** | | **$28** |